Skip to content. | Skip to navigation

Personal tools

Navigation

You are here: Home / Imaging / Publications

Publications

List of publications that have resulted from images acquired within the BioFrontiers Advanced Light Microscopy Core

Please report publications that contain data collected within the BioFrontiers Advanced Light Microscopy Core to Joe Dragavon.


 

Number of Publications: 64

2019 (4)

  • Tamura, R., Balabanova, A., Frakes, S., Bargmann, A., Grimm, J., Yin, H. Photoactivatable prodrug of Doxazolidine targeting exosomes. 2019, Journal of Medicinal Chemistry. Nikon Spinning Disc Confocal
  • Moon, S.L., Morisaka, T., Khong, A., Lyon, K., Parker, R., Stasevich, T. J. Multicolor single-molecule tracking of mRNA interactions with RNP granules. 2019, Nature Cell Biology, 2, 162-168. Imaris Workstation
  • Tauber, D., Parker, R. 15-Deoxy-Delta-12,14-prostaglandin J2 promotes phosphorylation of eukaryotic initiation factor 2 alpha and activates the integrated stress response. 2019, Journal of Biological Chemistry, doi: 10.1074/jbc.RA118.007138. Nikon Spinning Disc Confocal
  • Erickson, K. D., Garcea, R. L. Viral replication centers and the DNA damage response in JC virus-infected cells. 2019, Virology, 528C, 198-206. Nikon A1R

2018 (13)

  • Ziemba, B., Falke, J. A PKC-MARCKS-PI3K regulatory module links Ca2+ and PIP3 signals at the leading edge of polarized macrophages. 2018, PLOS One, https://doi.org/10.1371/journal.pone.0196678. Nikon Spinning Disc Confocal
  • Moon, S., Parker, R. Analysis of elF2B bodies and their relationships with stress granules and P-bodies. 2018, Scientific Reports, 8, 12264. Nikon Spinning Disc Confocal
  • Khong, A., Parker, R. mRNP architecture in translating and stress conditions reveals an ordered pathway of mRNP compaction. 2018, Journal of Cell Biology, 217, 4124-4140. Imaris Workstation
  • Gonzalez Rodriguez, A., Schroeder, M., Walker, C., Anseth, K. FGF-2 inhibits contractile properties of valvular interstitial cell myofibroblasts encapsulated in 3D MMP-degradable hydrogels. 2018, APL Bioengineering, 2, 46104. Nikon Spinning Disc Confocal and Imaris Workstation
  • McCorkindale, A., Wahle, P., Werner, S., Jungreis, I., Menzel, P., Shukla, C., Abreu, R., Irizarry, R., Meyer, I., Kellis, M., Zinzen, R. A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation in lncRNAs. 2018, bioRxiv, https://doi.org/10.1101/483461. Nikon A1R and Nikon Spinning Disc Confocal
  • Han, Y., Goldber, K. M., Lippard, S. L., Palmer, A. E. Superiority of SpiroZin2 versus FljuoZin-3 for monitoring vsicular Zn2+ allows tracking of lysosomal Zn2+ pools. 2018, Scientific Reports, 8, 15034. Nikon A1R and Nikon Spinning Disc Confocal
  • Manna, P., Hung S. T., Mukherjee, S., Friis, P., Simpson, D. M., Palmer, A. E., Jimenez, R. Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter. 2018, Integrated Biology, 10, 516-526. Nikon Spinning Disc Confocal
  • Anderson, A. J., Peters, E. B., Neumann, A., Wagner, J., Fairbanks, B., Bryant, S. J., Bowman, C. N. Cytocompatibility and Cellular Internalization of PEGylated "Clickable" Nucleic Acid Oligomers. 2018, Biomacromolecules, 19, 2535-2541. Nikon Spinning Disc Confocal
  • Brown, T. E., Silver, J. S., Worrell, B. T., Marozas, I. A., Yavitt, F. M., Gunay, K. A., Bowman, C. N., Anseth, K. S.Secondary Photocrosslinking of Click Hydrogels To Probe Myoblast Mechanotransduction in Three Dimensions. 2018, J Am Chem Soc, 140, 11585-11588. Imaris Workstation
  • Killaars, A. R., Grim, J. C., Walker, C. J., Hushka, E. A. Brown, T. E., Anseth, K. S.Extended Exposure to Stiff Microenvironments Leads to Persistent Chromatin Remodeling in Human Mesenchymal Stem Cells. 2018, Advanced Science, 6, 1801483. Imaris Workstation
  • Vogler, T. O., Wheeler, J. R., Nguyen, E. D., Hughes, M. P., Britson, K. A., Lester, E., Rao, B., Betta, N. D., Whitney, O. N., Ewachiw, T. E., Gomes, E., Shorter, J., Lloyd, T. E., Eisenberg, D. S., Taylor, J. P., Johnson, A. M., Olwin, B. B., Parker, R.TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle. 2018, Nature, 563, 508-513. Nikon NSTORM, Nikon Spinning Disc and Imaris Workstation
  • Youmans, D. T., Schmidt, J. C., Cech, T. R.Live-cell imaging reveals the dynamics of PRC2 and recruitment to chromatin by SUZ12-associated subunits. 2018, Genes Development, 32, 794-805. Nikon NSTORM
  • Braselmann, E., Wierzba, A. J., Polaski, J. T., Chrominski, M., Holmes. Z. E., Hung, S. T., Batan, D., Wheeler, J. R., Parker, R., Jimenez, R., Gryko, D., Batey, R. T., Palmer, A. E.A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. 2018, Nature Chemical Biology, 10, 964-971. Nikon A1R

2017 (10)

  • Carter, K., Carpenter, M., Fiedler, B., Jimenez, R., Palmer, A. Critical comparison of FRET-sensor functionality in the cytosol and endoplasmic reticulum and implications for quantification of ions. 2017, Anal Chem. Nikon Spinning Disc Confocal
  • Bruni, G., Weekley, R., Dodd, B., Kralj, J. Voltage-gated calcium flux mediates Escherichia coli mecanosensation. 2017, PNAS, 114, 9445-50. Nikon NSTORM
  • Sharma, S., Floren, M., Ding, Y., Stenmark, K., Tan, W., Bryant, S. A photoclickable peptide microarray platfrom for facile and rapid screening of 3-D tissue microenvironments. 2017, Biomaterials, 143, 17-28. Nikon Spinning Disc Confocal
  • Young, A., Minson, M., McQuate, S., Palmer, A. Optimized fluorescence complementation platform for visualizing Salmonella effector proteins reveals distinctly different interacellular niches in different cell types. 2017, ACS Infect Dis, 3, 575-84. Nikon A1R and Nikon Spinning Disc Confocal
  • Connacher, M., Tay, J., Ahn, N. Rear-polarized Wnt5a-receptor-actin-myosin-polarity (WRAMP) structures promote the speed and persistence of directional cell migration. 2017, Mol Biol Cell, 28, 1924-36. Nikon A1R, Nikon Spinning Disc Confocal, and Image Analysis
  • Ma, H., Killaars, A., DelRio, F., Yang, C., Anseth, K. Myofibroblastic activation of valvular insterstitial cells is modulated by spatial variations in matrix elasticity and its organization. 2017, Biomaterials, 131, 131-44. Nikon A1R
  • Wang, D., Agrawal, A., Piestun, R., Schwartz, D. Enhanced information content for three-dimensional localization and tracking using the double-helix point spread function with variable-angle illumination epifluorescence microscopy. 2017, Applied Physics Letters, 110, 211107. Nikon A1R with the DoubleHelix module
  • Dodd, B., Kralj, J. Live cell imaging reveals pH oscillations in Saccharomyces cerevisiae during metabolic transitions. 2017, Scientific Reports, 7, 13922. Nikon NSTORM and Nikon Spinning Disc Confocal
  • Levenga, J., Wong, H., Milstead, R., Keller, B., LaPlante, L., Hoeffer, C. AKT isoforms have distinct hippocampal expression and roles in synaptic plasticity. 2017, elife 2017;6:e30640. Nikon A1R Confocal
  • Wang, D., Wu, H., Schwartz, D. Three-dimensional tracking of interfacial hopping diffusion. 2017, Physics Review Letters, 119, 268001. Nikon A1R with the DoubleHelix module

2016 (12)

  • Bennet, C. G., Riemondy, K., Chapnick, D. A., Bunker, E., Liu, X., Kuersten, S., Yi, R. Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration. 2016, Nucleic Acids Res. Molecular Devices ImageXpress MicroXL
  • Floren, M., Bonani, W., Dhamarajan, A., Motta, A., Migliarini, C., Tan, W. Human mesenchymal stem cells cultured on silk hydrogels with variable stiffness and growth factor differentiate into mature smooth muscle cell phenotype. 2016, Acta Biomaterialia, 31, 156–66. Nikon A1R
  • Schmidt, J., Zaug, A., Cech, T. Live cell imaging reveals the dynamics of telomerase recruitment to telomeres. 2016, Cell, 166, 1188-97. Nikon NSTORM
  • O'Hara, S., Garcea, R. Murine polyomavirus cell surface receptors activate distinct signaling pathways required for infection. 2016, mBio, 7, E01836-16. Nikon A1R
  • Heiser, K., Nicholas, C., Garcea, R. Activation of DNA damage repair pathways by murine polyomavirus. 2016, Virology, 497, 346-56. Nikon A1R
  • Qin, Y., Sammond, D., Brasselmann, E., Carpenter, M., Palmer, A. Development of an optical Zn(2+) probe based on a single fluorescent protein. 2016, ACS Chem Biol, 11, 2744-51. Nikon A1R
  • Jain, S., Wheeler, J. R., Walters, R. W., Agrawal, A., Barsic, A., Parker, R. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure. 2016, Cell, 164, 487 - 98. Nikon N-STORM with the Double-Helix Module
  • Yang, C., DelRio, F., Ma, H., Killaars, A., Basta, L., Kyburz, K., Anseth, K. Spatially patterned matrix elasticity directs stem cell fate. 2016, PNAS, 113, E4439-45. Nikon A1R
  • Wheeler, J., Matheny, T., Jain, S., Abrish, R., Parker, R. Distinct stages in stress granule assembly and disassembly. 2016, ELife, 5, E18413. Nikon Spinning Disc Confocal
  • Konetski, D., Gong, T., Bowman, C. Photoinduced vesicle formation via the copper-catalyzed azide-alkyne cycloaddition reaction. 2016, Langmuir, 32, 8195-8201. Nikon A1R
  • Pugach, E., Blenck, C., Dragavon, J., Langer, S., Leinwand, L. Estrogen receptor profiling and activity in cardiac myocytes. 2016, Mol Cell Endocrinol, 431, 62-70. Nikon A1R
  • He, L., Dragavon, J., Cho, S., Mao, C., Yildirim, A., Ma, K., Chattaraj, R., Goodwin, A., Park, W., Cha, J. Self-assembled gold nanostar-NaYF4:Yb/Er clusters for multimodoal imaging, photothermal and photodynamic therapy.. 2016, J. Mater. Chem. B, 4, 4455-61. Nikon Multiphoton (demo)

 
2015 (8)

  • Wong, H., Levenga, J., Cain, P., Rothermel, B., Klann, E., Hoeffer, C. RCAN1 overexpression promotes age‑dependent mitochondrialdysregulation related to neurodegeneration in Alzheimer’s disease. 2015, Acta Neruopathol, 130, 829 - 43. Nikon A1R
  • Wang, D., Renfeng, H., Mabry, J., Miao, B., Wu, D. T., Kaloian, K., Schwartz, D. K. Scaling of Polymer Dynamics at an Oil-Water Interface in Regimes Dominated by Viscouls Drag and Desorption-Mediated Flight. 2015, J. Am. Chem. Soc., 137, 12312 - 20. Nikon N-STORM
  • You, J.; O'Hara, S. D.; Velupillai, P.; Castle, S.; Levery, S.; Garcea, R. L.; Benjamin, T. Ganglioside and Non-ganglioside Mediated Host Responses to the Mouse Polyomavirus. 2015, PLoS Pathog, 11, e1005175. Nikon A1R
  • Buch, M. H., Liaci, A. M., O'Hara, S. D., Garcea, R. L., Neu, U., Stehle, T. Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity. 2015, PLoS Pathog, 11, e1005104. Molecular Devices ImageXpress MicroXL and Nikon A1R
  • Chapnick, D. A., Bunker, E., Liu, X. A biosensor for the activity of the “sheddase” TACE (ADAM17) reveals novel and cell type-specific mechanisms of TACE activation. 2015, Sci. Sig, 8, rs1. Molecular Devices ImageXpress MicroXL and Nikon A1R
  • Baratta, M., Pomrenze, M., Nakamura, S., Dolzani, S., Cooper, D. Control Over Stress Accelerates Extinction of Drug Seeking via Prefrontal Cortical Activation. 2015, Neurobiology of Stress, 2, 20 - 27. Nikon A1R
  • Floren, M., Tan, W. Three-Dimensional, Soft Neotissue Arrays as High Throughput Platforms for the Interrogation of Engineered Tissue Environments. 2015, Biomaterials, 59, 39 - 52. Nikon A1R
  • Dean, K. M., Lubbeck, J. L., Davis, L. M., Regmi, C. K., Chapagain, P. P., Gerstman, B. S., Jimenez, R., Palmer, A. E. Microfluidics-Based Selection of Red-Fluorescent Proteins with Decreased Rates of Photobleaching. 2015, Integr Biol, 7, 263 - 73. Nikon A1R

 
2014 (7)

  • Lee, S., Zhang, C., Liu, X. Role of Glucose Metabolism and ATP in Maintaining PINK1 Levels During Parkin-mediated Mitochondrial Responses. 2014, J Biol Chem. ImageXpress MicroXL and Nikon A1R
  • Zhang, Z., Lee, S., Peng, Y., Bunker, E., Shen, C., Giaime, E., Shen, J., Shen, J., Zhou, Z., Liu, X. A Chemical Genetic Approach to Probe the Function of PINK1 in Mitochondrial Dynamics. 2014, Cell Research. ImageXpress MicroXL and Nikon A1R
  • Zhang, Z., Lee, S., Peng, Y., Bunker, E., Giaime, E., Shen, J., Zhou, Z., Liu, X. PINK1 Triggers Autocatalytic Activation of Parkin to Specify Cell Fate Decisions. 2014, Curr Biol, 24, 1854 - 1865. ImageXpress MicroXL and Nikon A1R
  • Ziemba, B.. Li, J., Landgraf, K., Knight, J., Voth, G., Falke, J. Single Molecule Studies Reveal a Hidden Step in the Activation Mechanism of Membrane-Bound Protein Kinase C Alpha. 2014, Biochemistry, 53, 1697 - 713. Nikon A1R
  • McKay, D., Xi, L., Cech, T. Structure and Function of Steroid Receptor RNA Activator Protein, the Proposed Partner of SRA Noncoding RNA. 2014, J Mol Biol, 426, 1766 - 85. Nikon A1R
  • Griffith, E., Rapf, R., Shoemaker, R., Carpenter, B., Vaida, V. Photoinitiated Synthesis of Self-Assembled Vesicles. 2014, J Am Chem Soc, 136, 3784 - 7. Nikon A1R
  • Chapnick, D., Liu, X. Leader cell positioning drives wound-directed collective migration in TGFβ-stimulated epithelial sheets. 2014, Mol Biol Cell, 25, 1586 - 93. Molecular Devices ImageXpress MicroXL

 
2013 (8)

  • Nakashima, M., Nandakumar, J., Sullivan, K., Espinosa, J., Cech, T. Inhibition of Telomerase Recruitment and Cancer Cell Death. 2013, J Biol Chem, 288, 33171 - 80.  Zeiss Axiovert 200M
  • Natale, A., Duplantis, J., Piasta, K., Falke, J. Structure, Function and On-Off Switching of a Core Unit Contact between CheA Kinase and CheW Adaptor Protein in the Bacterial Chemosensory Array: A Disulfide Mapping and TAM-IDS Study. 2013, Biochemistry, 44, 7753 - 65.  Nikon Te-2000
  • Witze, E., Connacher, M., Houel, S., Schwartz, M., Morphew, M., Reid, L., Sacks, D., Anseth, K., Ahn, N. Wnt5a Directs Polarized Calcium Gradients by Recruiting Cortical Endoplasmic Reticulum to the Cell Trailing Edge. 2013, Dev Cell, 26, 645 - 57.  Olympus IX-81, Nikon Te-2000, and Nikon A1R
  • Guess, M., Barthel, K., Pugach, E., Leinwand, L. Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging. 2013, Skelet Muscle, 3, 19.  Nikon Te-2000
  • Qin, Y.; Miranda, J., Stoddard, C., Dean, K., Galato, D., Palmer, A., Direct Comparison of a Genetically Encoded Sensor and Small Molecule Indicator: Implications for Quantification of Cytosolic Zn2+. 2013, ACS Chem Biol, 8, 2366 - 71. Zeiss Axiovert 200M and Nikon A1R Confocal
  • Piasta, K., Ulliman, C., Slivka, P., Crane, B., Falke, J. Defining a Key Receptor-CheA Kinase Contact and Elucidating Its Function in the Membrane-Bound Bacterial Chemosensory Array: A Disulfide Mapping and TAM-IDS Study. 2013, Biochemistry, 52, 3866 - 80. Nikon Te-2000
  • Davis, L., Lubbeck, J., Dean, K., Palmer, A., Jimenez, R. Microfluidic cell sorter for use in developing red fluorescent proteins with improved photostability. 2013, Lab Chip, 13, 2320 - 7. Zeiss Axiovert 200M
  • Chapnick, D., Jacobsen, J., Liu, X. The Development of a Novel High Throughput Computational Tool for Studying Individual and Collective Cellular Migration. 2013, PlosOne. Molecular Devices ImageXpress MicroXL

 

2012 (2)

  • Geng, X., Huang, C., Qin, Y., McCombs, J., Yuan, Q., Harry, B., Palmer, A., Xia, N., Xue, D. Hepatitis B virus X protein targets Bcl-2 proteins to increase intracellular calcium, required for virus replication and cell death induction. 2012, Proc Nat Acad Sci USA, 109, 18471 - 6. Zeiss Axiovert 200M
  • Park, J., Qin, Y., Galati, D., Palmer, A. New Sensors for Quantitative Measurement of Mitochondrial Zn(II). 2012, ACS Chem Biol, 7, 1636 - 40. Zeiss Axiovert 200M and Nikon A1R Confocal
This is Pacific Theme