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Day 8: ChIP-Seq Analysis

Day 8: ChIP-Seq Analysis Short-Read Workshop 2017

Welcome to Day 8 of the Short-Read Sequencing Analysis Workshop. The videos for Day 8 will introduce different types of ChIP-Seq experiments and analyses including the choice of appropriate controls, including the ENCODE best practices. The program MACS will be used for peak calling, and the MEME suite will be introduced for motif discovery. In-class we will work on analyzing transcription factor data sets.

Videos for Day 8:

8.1 Intro to CHIP-Seq

8.2 Peak calling with MACS

8.3 Evaluate ChIP-seq data

8.4 Motif analysis with MEME

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