2019 Short Read Workshop
Here is where you find all the videos, files and instructions for the short read workshop.
- 2019_Before_the_workshop
- linux-mac-windows
- Day 1
- Day 1: Course Overview, Intro to Illumina and Library QC Short-Read Workshop 2017
- Day 2
- Intro to Linux
- slides
- 2018_missed_day_1
- Day_3
- Day 3: Cluster Usage and Data Transfer Short-Read Workshop 2018
- videos
- Day_4
- Day 4: Sequencing QC and Introduction to Read Mapping and Visualization
- Day_5
- Assessment
- files
- Day_6
- DNA-seq for SNPs and INDELs
- Day 7
- Welcome to Day 7 of the Short-Read Sequencing Analysis Workshop.
- Day_8
- day_9
- Continue RNA-seq and start Nascent
- day_10
- potpourri, bedtools, R studio
