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Day 7: DNA Resequencing and Variant Calling

Day 7: DNA Resequencing and Variant Calling Short-Read Workshop 2017

Welcome to Day 7 of the Short-Read Sequencing Analysis Workshop.The videos for day 6 will go over a resequencing pipeline using Bowtie2 and the GATK Toolkit for vairant calling. The three videos will show you how to work with both single-end and paired-end reads, and how to work with both artificial/model data and real Illumina sequencing data.

 

Videos for Day 7

7.1 Introduction to Resequencing

7.2 Pipeline for Variant Calling with GATK

7.3 Post-Processing Variant Results

 

Homework for Day 7:

Day 7 Homework

 

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