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Day 6: Introduction to Read Mapping and Visualization

Day 6: Introduction to Read Mapping and Visualization Short-Read Analysis Workshop 2017

Welcome to Day 6 of the Short-Read Sequencing Analysis Workshop.The videos for day 6 will give you an introduction to read mapping. Video 1 will go over how most short-read mapping programs work and show you how to index a reference sequence (genome) for both Bowtie and BWA. Videos 2 and 3 will go over the mapping programs Bowtie and BWA, and Video 4 will introduce you to the program IGV which can be used to visualize your alignment data.


Videos for Day 6:

6.1 Intro to Mapping

6.2 Bowtie

6.3 BWA

6.4 IGV

 

Homework Day 6:

Day 6 Homework

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