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Day 1: Course Overview, Intro to Illumina and Library QC

Day 1: Course Overview, Intro to Illumina and Library QC Short-Read Workshop 2017

Welcome to Day 1 of the Short-Read Sequencing Analysis Workshop. Today we will be going over what this workshop is about, as well as introduce you to Illumina sequencing and some aspects of library QA/QC. We encourage you to watch the videos for Day 1 before the first day of class, but unlike the rest of the workshop these videos can also be watched after the class and you won't be left behind.

 

Videos for Day 1:

1.1 Course Content

1.2 Illumina

1.3 Library Q and A

1.4 Overview of Seq

 

In-Class Slides for Day 1:

Day 1 Introduction 2017

Day 1 Data Processing and Sequencing Considerations 

 

Video Slides for Day 1:

Library QC slides

Day 1 Video 1

Day 1 Video 3

Intro to Illumina Sequencing

 

Additional Bonus Reading

2014 Seq Depth Coverage Review

Head et al. 2014 Library Troubleshooting

Snyder 2015 Seq Tech Review

 

 

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